Code used in analysis titled "MinION Analysis and Reference Consortium: Phase 2 data release and analysis of R9.0 chemistry"

Code used in the analysis of the publication titled "MinION Analysis and Reference Consortium: Phase 2 data release and analysis of R9.0 chemistry" (F1000 Research, 2017).The following grants supported the research of the following authors: NHGRI, USA award numbers HG006321 and HG007827 (MJ and HEO, UCSC), Canadian Institutes of Health Research #10677 (JT and TS, UBC), Brain Canada Multi-Investigator Research Initiative Grant with matching support from Genome British Columbia, the Michael Smith Foundation for Health Research and the Koerner Foundation (JT and TS, UBC), BBSRC grant BB/M020061/1 (ML and SM, Nottingham), Wellcome Trust grant 090532/Z/09/Z (CI, WTCHG), UK Antimicrobial Resistance Cross Council Initiative supported by the seven research councils (MR/N013956/1) and Rosetrees Trust grant A749 (JOG, UEA), BBSRC grant BB/J010375/1 (RML, Earlham), E o R Börjessons foundation (OW, Uppsala), and National Science Foundation DEB-1355059 (BB, VCU)